Protein

Protein accession
1kdRd [EnVhog]
Representative
6v3ib
Source
EnVhog (cluster: phalp2_3828)
Protein name
1kdRd
Lysin probability
99%
PhaLP type
endolysin
Probability: 94% (predicted by ML model)
Protein sequence
MAKLTPDATRTEHGLVINEKIIPWGAVWPKDSGAYKKGAQYKADRLLSGGTGKVKGVTIHNTNDLKNVEEDAEQYTRATWPNANMNDARVHYYVDDINAWQNLREDEVGWHAGDGRKATGGNETTLSIEIIMDGSGSKEDRKAEENGVLLAALLLKKHGLSVNELYTHNHWMGHPDSIVQGARKNCPLYILPHWAQFKQKVAAKLTELNGGATTTEAGKTEIMGKAKASAQQMALFARSKNAEPQLPACSLEQLAQFFLEEGEAEGVRGDVAFAQSLHETGFFKYGGIVLPTQNNYAGIGALNGNAKGQAATFPDPRTGVRAQIQHLKAYASKAALVNGCVDPRFSLVTRGSAQYVEWLGASDNPNGKGWAVPGKGYGSKIVALLGQIMAFEVPQTSTPSEPEEQEPEFPAYQLEGLETLVEADVINSPEFWRQKFGEQVTVGELFGILGKLFTKVTE
Physico‐chemical
properties
protein length:458 AA
molecular weight:49853,5 Da
isoelectric point:5,85
hydropathy:-0,44
Representative Protein Details
Accession
6v3ib
Protein name
6v3ib
Sequence length
392 AA
Molecular weight
43449,60330 Da
Isoelectric point
8,62911
Sequence
MDVIKNLVAEDKYCIKCPNAMTPEFIVVHNTANDASARNEVSYMIRNDNQVSYHYAIDDKEIVQGIPEDRNAWHAGDGANGVGNRKGIAVEICYSKSGGKKFDDAEILATKFIAFKLKEKGWGIEKVKKHQDFSGKYCPHRTLDIGWTRFLNMIQAELNELNKDNGIAIMGKSFKSAAALQAELQSKNPTLNPRFKDIANTYLKIGAKYNVKGDIAFCQMAHETGWLKFGGQVSESQNNFAGIGATNGGAKGAVFASIEDGVTAHIQHLYAYASSLDLPKGEYLIDPRFNLVKRGIAPYWTDLNGRWAVPGTTYGQSILKIYNAVTDIKSDYPKWRAFGNKWYYYTSADDYAKASAGQLRWINDNGKRYLVDESGAMLANVAINKSGEVNGC
Other Proteins in cluster: phalp2_3828
Total (incl. this protein): 489 Avg length: 452,3 Avg pI: 5,96
Protein ID Length (AA) pI
6v3ib 392 8,62911
13ceC 451 5,31418
1IBSR 431 6,90624
1kIfz 520 6,69094
1kel3 458 5,76117
1m790 458 5,67210
1mIiG 400 7,19436
1mVBn 458 5,75940
1mmyu 458 5,75690
1nabp 458 5,85387
1nhqr 458 5,85381
1niNN 458 5,76117
1nkpS 458 5,75940
1oa6E 437 5,72689
24rRp 379 6,79541
2X5lV 455 5,36830
2lQRj 458 5,76117
2lTeR 458 5,85381
2m9UB 458 5,85381
2mAx1 458 5,75690
2sCZB 417 6,56379
3AsKC 458 5,85381
3B3PD 458 5,85381
3KOE9 458 5,85381
3PMeL 505 5,43758
Similar Clusters (pHMM search)
# Cluster # Members Identity (%) Alignment Length E-value
1 phalp2_6744
29vRH
 5 35,8% 332 1.502E-84
2 phalp2_1125
1lyG
 9 29,0% 327 5.167E-66
3 phalp2_14253
3dTBY
 751 48,1% 245 7.783E-62
4 phalp2_5406
2FYAK
 2 23,4% 324 6.718E-52
5 phalp2_27574
5CQSE
 6 23,6% 321 8.366E-20

Domains

Domains
Ami2
GLUCO
Unannotated
Representative sequence (used for alignment): 6v3ib (392 AA)
Member sequence: 1kdRd (458 AA)
1 392 AA (representative)
Domain positions follow the representative sequence above; the member sequence bar is scaled to the same axis.
Legend: EAD CBD Linker Disordered Unannotated
Pfam accessions: PF01510, PF01832

Taxonomy

  Name Taxonomy ID Lineage
Phage Unknown from Metagenome
[NCBI] 		UNKNOWN_ENVHOG No lineage information
Host No host information

Coding sequence (CDS)

Coding sequence (CDS)

No CDS data available.

Gene Ontology

No Gene Ontology terms available.

Enzymatic activity

No enzymatic activity data available.

Tertiary structure

No tertiary structures available for this protein.

The structures below correspond to the cluster representative (6v3ib) rather than this protein.
PDB ID
6v3ib
Method AlphaFoldv2
Resolution 91.18
Chain position -
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50