Protein

Protein accession
5Vd10 [EnVhog]
Representative
5Vd10 (this protein)
Source
EnVhog (cluster: phalp2_4897)
Protein name
5Vd10
Lysin probability
99%
PhaLP type
endolysin
Probability: 96% (predicted by ML model)
Protein sequence
MTLIIGSARIDENGNLKNGKAGDQTGKEVCTQSYYMHKKGWYVLRPKSVTHANALALAMKQACDNNKIGYDQNERNGVITQLKKYDLLDKIATATECDCSSLVRACIIQATGKDVGNITTANEASVLEASGLFEAKKSVTGEGMLYNGDILVTKTKGHTVIVVSGRARSTATTSNTSTATKSYLSKGDKGNDVKTMQTMLIACGYSCGSYGADGDFGSGSDKALRKFQGDYGLTVDGKYGSKSKAKLESVYNQKKSSKSLGTYKVTAKSGLYVREGAGTNYDIVPKNKLTKNAQEHAKSNGALRYGTRVTVKEWKNGFARIPSGWVSGDYLRKV
Physico‐chemical
properties
protein length:334 AA
molecular weight:35942,3 Da
isoelectric point:9,52
hydropathy:-0,52
Other Proteins in cluster: phalp2_4897
Total (incl. this protein): 91 Avg length: 265,7 Avg pI: 9,08
Protein ID Length (AA) pI
1FFwW 283 9,03964
1NyZE 248 9,42136
1r4EZ 241 9,84595
24JBR 313 9,02230
38P2O 250 4,75449
3A6iM 241 9,84595
3ITl3 261 10,14753
3PT3p 261 7,94974
3TEFb 249 8,90071
3TObp 261 8,23037
3TQEz 237 9,18560
3WEvo 243 5,01089
3WKcr 245 8,93772
3dUaz 249 9,05099
3e1k7 240 8,91806
3e2q2 266 8,70686
3fKKh 263 8,84663
3gHi7 261 8,41933
3iVpn 262 9,14060
3iWu0 258 7,62475
3ikC6 261 8,25706
3ipL2 263 8,75250
3kXWT 334 9,57022
3lHSa 333 9,51716
3sVMb 252 9,20378
Similar Clusters (pHMM search)
# Cluster # Members Identity (%) Alignment Length E-value
1 phalp2_36439
13b8a
 1 40,8% 335 3.198E-74
2 phalp2_38535
1GI7Z
 55 37,2% 360 8.174E-74
3 phalp2_11747
41dax
 7 38,6% 269 2.777E-62
4 phalp2_18916
23Hlc
 105 37,1% 307 7.808E-48
5 phalp2_65
7Nfel
 27 36,8% 293 1.592E-41
6 phalp2_1871
3VJha
 9 21,0% 408 2.200E-39
7 phalp2_40064
414el
 5 23,0% 269 8.116E-17
8 phalp2_909
8miMQ
 3 28,8% 250 1.620E-12
9 phalp2_15057
7s7pP
 172 23,3% 227 2.867E-10

Domains

Domains
Unannotated
PG_1
Unannotated
Protein sequence: 5Vd10
1 334
Legend: EAD CBD Linker Disordered Unannotated
Pfam accessions: PF01471

Taxonomy

  Name Taxonomy ID Lineage
Phage Unknown from Metagenome
[NCBI] 		UNKNOWN_ENVHOG No lineage information
Host No host information

Coding sequence (CDS)

Coding sequence (CDS)

No CDS data available.

Gene Ontology

No Gene Ontology terms available.

Enzymatic activity

No enzymatic activity data available.

Tertiary structure

PDB ID
5Vd10
Method AlphaFoldv2
Resolution 89.16
Chain position -
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50