Protein

Protein accession
5mdkv [EnVhog]
Representative
5mdkv (this protein)
Source
EnVhog (cluster: phalp2_8003)
Protein name
5mdkv
Lysin probability
99%
PhaLP type
endolysin
Probability: 98% (predicted by ML model)
Protein sequence
MLNFFTVALPLMATVTTNMATLPENSKSIISMNSQTATTEVVEPEEKPKEKRLVCKGCNENESFVLNTLQDQGILDKNALATIMANIKQESMFVSNICEGGARVLYHQCRSGGYGAIQWTSSDRYYGLGQFAAKIGGDPSSLDTQIQYMFYERDWKMIEDGMKTPGKSINDYMRLAYKWIRWGIKGPREHYANQYLNKFQYQTVDS
Physico‐chemical
properties
protein length:206 AA
molecular weight:23407,4 Da
isoelectric point:6,73
hydropathy:-0,47
Other Proteins in cluster: phalp2_8003
Total (incl. this protein): 2142 Avg length: 199,8 Avg pI: 7,96
Protein ID Length (AA) pI
114yP 150 5,66784
11SDj 192 9,32395
11Ts3 168 8,68500
1268y 197 8,77474
127N7 168 8,31973
12jYi 207 6,82360
13KWC 197 6,15955
13OsB 204 8,86590
13Ro5 208 8,66992
13SQJ 165 8,91644
13Up2 201 8,15411
1443B 203 8,41585
144WR 194 5,82613
145L9 193 6,81519
14bk7 207 9,14138
14eI9 210 9,21777
14eic 201 8,59997
14hAn 229 7,63179
154rX 221 9,16981
158JM 219 8,59365
158bS 217 8,92566
159TS 212 8,93740
15UCY 196 9,42942
15Y8p 241 9,00515
15ZRt 183 9,05750
Similar Clusters (pHMM search)
# Cluster # Members Identity (%) Alignment Length E-value
1 phalp2_13616
5qZ08
 118 51,7% 168 7.837E-92
2 phalp2_37575
3TNHr
 1 26,6% 135 3.280E-06
3 phalp2_22976
3nRWg
 1 25,3% 166 6.281E-05

Domains

Domains
Disordered region
Phage_lys2
Protein sequence: 5mdkv
1 206
Legend: EAD CBD Linker Disordered Unannotated
Pfam accessions: PF18013

Taxonomy

  Name Taxonomy ID Lineage
Phage Unknown from Metagenome
[NCBI] 		UNKNOWN_ENVHOG No lineage information
Host No host information

Coding sequence (CDS)

Coding sequence (CDS)

No CDS data available.

Gene Ontology

No Gene Ontology terms available.

Enzymatic activity

No enzymatic activity data available.

Tertiary structure

PDB ID
5mdkv
Method AlphaFoldv2
Resolution 85.82
Chain position -
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50