Protein

Protein accession
3ldzx [EnVhog]
Representative
5YKpd
Source
EnVhog (cluster: phalp2_6201)
Protein name
3ldzx
Lysin probability
99%
PhaLP type
endolysin
Probability: 99% (predicted by ML model)
Protein sequence
MNKQEFLSLIVPLAQAEAKRRKDAGTGFVLPSVCVGQAALETGWGGSSLMTKANAFFGIKATASWGGKVFSSKTQECYDSVNYTTITAAFRAYDTPADSVKDYYDLITGSTRYAAAVNATDARTAITAIKEGGYATSPTYVTNVMAVIDSNNLTQYDNVVTGNAEPQPAESKSAEELAQEIINGTWGNNPERRENITAKYGAAAYEAAQAIVNQKAGATEPAKPSKSTEELAQEIINGAWGSNPERRENITAKYGAAAYEAAQARVNEIMGAATIKSKTAEELADEIIKGKWGSNPERRENITAKYGAAAYKAAQAIVNKRMG
Physico‐chemical
properties
protein length:323 AA
molecular weight:34458,0 Da
isoelectric point:5,88
hydropathy:-0,43
Representative Protein Details
Accession
5YKpd
Protein name
5YKpd
Sequence length
327 AA
Molecular weight
34993,17160 Da
Isoelectric point
4,78126
Sequence
MNKQEFLQLIVPLAQAEAKRRKDAGTGFVLPSVCIGQAALETGWGGSSLMTKANAFFGIKATASWGGKVFSSKTQECYDNVNYTTITAAFRAYDTPADSVKDYYDLITGSTRYAAAVNVTDARTAITAIKEGGYATSPTYVTNVMAVIDSNNLTQYDNVVTGNAEPQPAESKSAEELAQEIINGVWGNNPERRENITAQYGAAAYEAAQAIVNQRAGATEEPAKPSKSAEELAQEIINGVWGNNPERRENITAQYGAAAYEAAQAIVNQRAGATEEPAKPSKSAEELAQEIINGVWGNNPERRENITAQYGAAAYEAAQAIVNERIG
Other Proteins in cluster: phalp2_6201
Total (incl. this protein): 71 Avg length: 278,3 Avg pI: 7,37
Protein ID Length (AA) pI
5YKpd 327 4,78126
19iYT 231 9,01270
1IoV2 240 8,51693
1cNxQ 243 9,36037
1gxaE 242 9,14963
1kikr 259 9,33491
21Aq8 249 9,42890
23HY5 246 9,31093
23cdh 259 8,87602
2olrC 241 9,33536
3JcQg 324 4,84646
3TFV7 245 9,45276
3Wz64 243 9,34967
3bSLR 244 8,91155
3gWXN 245 9,43838
3kTnl 231 8,91361
3rTLh 324 4,85447
3sEaL 325 4,75341
3tmv6 230 8,96473
3xLVG 324 4,75330
4yqBT 255 9,14602
4yw5l 272 9,33465
5B2T 232 9,20152
5KLOh 233 9,03436
5KbdE 324 4,89852
Similar Clusters (pHMM search)
# Cluster # Members Identity (%) Alignment Length E-value
1 phalp2_35516
JUJC
 21 50,9% 214 1.091E-78
2 phalp2_3102
419EZ
 42 39,5% 215 2.465E-48
3 phalp2_29953
8uJbN
 74 37,9% 237 1.323E-39
4 phalp2_10427
21C3Q
 5 26,0% 296 3.046E-17
5 phalp2_28852
56cnG
 1 28,6% 223 1.130E-12

Domains

Domains
GLUCO
CW_7
CW_7
CW_7
Representative sequence (used for alignment): 5YKpd (327 AA)
Member sequence: 3ldzx (323 AA)
1 327 AA (representative)
Domain positions follow the representative sequence above; the member sequence bar is scaled to the same axis.
Legend: EAD CBD Linker Disordered Unannotated
Pfam accessions: PF01832, PF08230

Taxonomy

  Name Taxonomy ID Lineage
Phage Unknown from Metagenome
[NCBI] 		UNKNOWN_ENVHOG No lineage information
Host No host information

Coding sequence (CDS)

Coding sequence (CDS)

No CDS data available.

Gene Ontology

No Gene Ontology terms available.

Enzymatic activity

No enzymatic activity data available.

Tertiary structure

No tertiary structures available for this protein.

The structures below correspond to the cluster representative (5YKpd) rather than this protein.
PDB ID
5YKpd
Method AlphaFoldv2
Resolution 85.17
Chain position -
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50