Protein

Protein accession
6xRGD [EnVhog]
Representative
6xRGD (this protein)
Source
EnVhog (cluster: phalp2_24722)
Protein name
6xRGD
Lysin probability
92%
PhaLP type
endolysin
Probability: 96% (predicted by ML model)
Protein sequence
MGRQMKLLSNRYNWYWRGLSVKALDLGSSMNRYWATGNRPLKLKTKIKTPKIINKILVLIIFIITNLGQPYAYAVSTYSQDRWKLYLHTKVISDKQYVCISRLWYLESRWNNRADNRKSTAYGIAQVLDTKTNDPFKQIDAGLRYIKHRYKGDGCKALAHHNKHGYY
Physico‐chemical
properties
protein length:167 AA
molecular weight:19694,6 Da
isoelectric point:10,11
hydropathy:-0,58
Other Proteins in cluster: phalp2_24722
Total (incl. this protein): 450 Avg length: 153,7 Avg pI: 9,91
Protein ID Length (AA) pI
17LSQ 145 9,80134
17Ocb 165 10,10376
17VbK 145 9,43219
1822f 168 9,80082
18MG8 130 9,97540
19C6x 113 6,95228
19HGx 162 9,81404
19HSy 171 9,05956
19HYC 161 10,06353
19NdA 163 9,94181
19O0S 154 9,80321
19PbD 154 9,64184
19UlJ 161 10,17094
19Uln 168 10,64961
19WNi 156 10,06817
19WpY 155 9,97882
19Xv2 166 10,14573
1JEc0 146 9,73552
1JEqw 145 9,48983
1JPJW 160 9,97676
1JUpw 130 9,82468
1K2RQ 161 9,98082
1K7Vr 156 10,26222
1K9cU 162 10,31219
1Kayp 173 10,01434
Similar Clusters (pHMM search)
# Cluster # Members Identity (%) Alignment Length E-value
1 phalp2_39477
5a1kB
 101 52,4% 122 2.668E-43
2 phalp2_33936
24xWk
 49 35,3% 133 9.619E-40
3 phalp2_16312
5eP1K
 178 37,7% 127 7.901E-38
4 phalp2_33247
5xEpJ
 2369 33,1% 157 1.840E-36
5 phalp2_29642
8rbDt
 11 40,6% 123 3.127E-35
6 phalp2_26560
80FIW
 18 27,8% 140 1.385E-27
7 phalp2_12055
587lb
 39 32,7% 119 1.381E-24
8 phalp2_4104
1wlVy
 47 38,9% 118 3.894E-22
9 phalp2_31778
4aZpD
 45 30,7% 130 2.278E-20
10 phalp2_31544
4bSnc
 14 30,6% 124 9.697E-19

Domains

Domains
Disordered region
Unannotated
Protein sequence: 6xRGD
1 167
Legend: EAD CBD Linker Disordered Unannotated

Taxonomy

  Name Taxonomy ID Lineage
Phage Unknown from Metagenome
[NCBI] 		UNKNOWN_ENVHOG No lineage information
Host No host information

Coding sequence (CDS)

Coding sequence (CDS)

No CDS data available.

Gene Ontology

No Gene Ontology terms available.

Enzymatic activity

No enzymatic activity data available.

Tertiary structure

PDB ID
6xRGD
Method AlphaFoldv2
Resolution 74.97
Chain position -
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50