Protein

Protein accession
PDRe [EnVhog]
Representative
PDRe (this protein)
Source
EnVhog (cluster: phalp2_570)
Protein name
PDRe
Lysin probability
98%
PhaLP type
endolysin
Probability: 98% (predicted by ML model)
Protein sequence
VSPHNSIISAGQALKAPPGLSLTNFHHPDIPTFKSRSRKGRQVNEIILHESVTNNTTSTAAVLQRRGLGVHLMIAPDGHVTQHADLAHDRLAHAKSHNGPSVGVEIINPYYPKRLRASLPWRRTIKDAPWAHKRAYILPTPEQAEATSKLIAWLTSPDALGLNIPRSWIGAQRKGHVALGRVKGAEERAPGVYAHHYFGHADAAWPALYAWLRLEAGLPPCLAYEEAIRRATGVRRFADVSDLSTHI
Physico‐chemical
properties
protein length:247 AA
molecular weight:27165,6 Da
isoelectric point:10,04
hydropathy:-0,34
Other Proteins in cluster: phalp2_570
Total (incl. this protein): 48 Avg length: 252,2 Avg pI: 8,59
Protein ID Length (AA) pI
1Ckp1 221 9,56377
1gEj0 261 5,58116
1pAqM 255 8,61054
1wWEM 244 9,40873
2cgjR 287 10,32005
2rMTI 269 8,49424
3KWfv 269 8,48212
3WeCq 243 9,40099
3e70I 243 9,58227
3e7wF 245 9,40718
45EXF 267 5,26286
4BLER 267 5,26286
4KuUf 352 9,18934
4Kuka 355 9,24336
4NTPN 245 9,40718
4RmA1 251 6,78643
4XiMK 228 9,31467
4c6qo 257 5,38307
4jpvB 253 9,58292
4wzej 228 9,24891
54Sk6 241 9,19031
561rO 243 9,51394
5IXk3 245 9,43941
5hvV6 245 9,56152
5jHV 288 7,89739
Similar Clusters (pHMM search)
# Cluster # Members Identity (%) Alignment Length E-value
1 phalp2_15280
176CL
 23 34,8% 258 1.224E-50
2 phalp2_1922
4j0pX
 1 30,2% 175 1.666E-29
3 phalp2_35327
7jVdp
 1 32,1% 165 2.095E-20
4 phalp2_9065
5sRvP
 49 27,8% 176 6.033E-19
5 phalp2_6291
6RoCS
 2 24,8% 225 1.110E-18
6 phalp2_22012
59QfH
 56 25,0% 176 2.328E-17
7 phalp2_12961
3bGHr
 3 22,7% 224 7.842E-17
8 phalp2_13009
40SH2
 16 26,9% 167 1.948E-16
9 phalp2_11397
8fe2
 6 21,0% 157 8.850E-16
10 phalp2_22919
33qi6
 180 24,4% 172 8.909E-09

Domains

Domains
Ami2
Protein sequence: PDRe
1 247
Legend: EAD CBD Linker Disordered Unannotated
Pfam accessions: PF01510

Taxonomy

  Name Taxonomy ID Lineage
Phage Unknown from Metagenome
[NCBI] 		UNKNOWN_ENVHOG No lineage information
Host No host information

Coding sequence (CDS)

Coding sequence (CDS)

No CDS data available.

Gene Ontology

No Gene Ontology terms available.

Enzymatic activity

No enzymatic activity data available.

Tertiary structure

PDB ID
PDRe
Method AlphaFoldv2
Resolution 96.02
Chain position -
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50